Scientific name | Cervus nippon |
Common name | Sika deer |
Maximum lifespan | 26.30 years (Cervus nippon@AnAge) |
Total mtDNA (size: 16429 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6243 | 10186 | 4035 | 2208 | 4709 | 5477 |
Base content per 1 kb (bases) | 380 | 620 | 246 | 134 | 287 | 333 |
Base content (%) | 38.0% | 62.0% |
Total protein-coding genes (size: 11339 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4324 | 7015 | 2956 | 1368 | 3345 | 3670 |
Base content per 1 kb (bases) | 381 | 619 | 261 | 121 | 295 | 324 |
Base content (%) | 38.1% | 61.9% |
D-loop (size: 990 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 370 | 620 | 215 | 155 | 325 | 295 |
Base content per 1 kb (bases) | 374 | 626 | 217 | 157 | 328 | 298 |
Base content (%) | 37.4% | 62.6% |
Total tRNA-coding genes (size: 1518 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 554 | 964 | 316 | 238 | 422 | 542 |
Base content per 1 kb (bases) | 365 | 635 | 208 | 157 | 278 | 357 |
Base content (%) | 36.5% | 63.5% |
Total rRNA-coding genes (size: 2529 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 974 | 1555 | 537 | 437 | 604 | 951 |
Base content per 1 kb (bases) | 385 | 615 | 212 | 173 | 239 | 376 |
Base content (%) | 38.5% | 61.5% |
12S rRNA gene (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 390 | 566 | 221 | 169 | 215 | 351 |
Base content per 1 kb (bases) | 408 | 592 | 231 | 177 | 225 | 367 |
Base content (%) | 40.8% | 59.2% |
16S rRNA gene (size: 1573 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 584 | 989 | 316 | 268 | 389 | 600 |
Base content per 1 kb (bases) | 371 | 629 | 201 | 170 | 247 | 381 |
Base content (%) | 37.1% | 62.9% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 253 | 428 | 177 | 76 | 209 | 219 |
Base content per 1 kb (bases) | 372 | 628 | 260 | 112 | 307 | 322 |
Base content (%) | 37.2% | 62.8% |
ATP8 (size: 201 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 57 | 144 | 42 | 15 | 64 | 80 |
Base content per 1 kb (bases) | 284 | 716 | 209 | 75 | 318 | 398 |
Base content (%) | 28.4% | 71.6% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 613 | 932 | 364 | 249 | 485 | 447 |
Base content per 1 kb (bases) | 397 | 603 | 236 | 161 | 314 | 289 |
Base content (%) | 39.7% | 60.3% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 248 | 436 | 150 | 98 | 200 | 236 |
Base content per 1 kb (bases) | 363 | 637 | 219 | 143 | 292 | 345 |
Base content (%) | 36.3% | 63.7% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 331 | 453 | 218 | 113 | 236 | 217 |
Base content per 1 kb (bases) | 422 | 578 | 278 | 144 | 301 | 277 |
Base content (%) | 42.2% | 57.8% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 467 | 673 | 317 | 150 | 320 | 353 |
Base content per 1 kb (bases) | 410 | 590 | 278 | 132 | 281 | 310 |
Base content (%) | 41.0% | 59.0% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 378 | 578 | 262 | 116 | 277 | 301 |
Base content per 1 kb (bases) | 395 | 605 | 274 | 121 | 290 | 315 |
Base content (%) | 39.5% | 60.5% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 362 | 680 | 272 | 90 | 295 | 385 |
Base content per 1 kb (bases) | 347 | 653 | 261 | 86 | 283 | 369 |
Base content (%) | 34.7% | 65.3% |
ND3 (size: 347 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 134 | 213 | 92 | 42 | 105 | 108 |
Base content per 1 kb (bases) | 386 | 614 | 265 | 121 | 303 | 311 |
Base content (%) | 38.6% | 61.4% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 515 | 863 | 364 | 151 | 428 | 435 |
Base content per 1 kb (bases) | 374 | 626 | 264 | 110 | 311 | 316 |
Base content (%) | 37.4% | 62.6% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 105 | 192 | 66 | 39 | 100 | 92 |
Base content per 1 kb (bases) | 354 | 646 | 222 | 131 | 337 | 310 |
Base content (%) | 35.4% | 64.6% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 679 | 1142 | 490 | 189 | 531 | 611 |
Base content per 1 kb (bases) | 373 | 627 | 269 | 104 | 292 | 336 |
Base content (%) | 37.3% | 62.7% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 200 | 328 | 154 | 46 | 118 | 210 |
Base content per 1 kb (bases) | 379 | 621 | 292 | 87 | 223 | 398 |
Base content (%) | 37.9% | 62.1% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 8 | 14 | 13 | 3 | 17 | 2 | 7 | 9 | 0 | 2 | 2 | 6 | 0 | 11 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 6 | 7 | 6 | 0 | 1 | 3 | 8 | 0 | 1 | 3 | 8 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 12 | 0 | 2 | 2 | 4 | 1 | 1 | 3 | 0 | 2 | 1 | 1 | 8 | 4 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 2 | 1 | 0 | 1 | 4 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
45 | 66 | 80 | 36 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 62 | 38 | 104 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 49 | 101 | 69 |
ATP8 (size: 201 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWLMMIMSMFLALFIIFQLKISKHNFHFNPELTLTKTQKQNTPWETKWTKIYLPLLLPQ* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 0 | 3 | 2 | 1 | 2 | 0 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 4 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 4 | 2 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 2 | 0 | 0 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
4 | 17 | 27 | 19 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 17 | 21 | 26 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 8 | 32 | 19 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 10 | 31 | 7 | 7 | 22 | 7 | 14 | 6 | 0 | 10 | 8 | 19 | 1 | 22 | 20 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 13 | 11 | 14 | 1 | 9 | 12 | 19 | 7 | 11 | 6 | 10 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 22 | 0 | 7 | 6 | 15 | 0 | 1 | 2 | 11 | 8 | 3 | 2 | 13 | 6 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 10 | 0 | 6 | 9 | 9 | 0 | 1 | 2 | 5 | 0 | 0 | 0 | 1 | 0 | 14 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
149 | 102 | 140 | 124 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 133 | 96 | 210 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
24 | 129 | 211 | 151 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 8 | 11 | 3 | 2 | 13 | 2 | 12 | 6 | 0 | 4 | 4 | 6 | 0 | 3 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 4 | 1 | 3 | 0 | 2 | 1 | 5 | 0 | 3 | 1 | 8 | 1 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 12 | 2 | 7 | 2 | 7 | 0 | 0 | 5 | 9 | 2 | 0 | 2 | 3 | 3 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 11 | 4 | 5 | 5 | 5 | 0 | 0 | 1 | 4 | 1 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
55 | 52 | 66 | 55 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 61 | 86 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
17 | 43 | 109 | 59 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 9 | 7 | 5 | 3 | 14 | 1 | 9 | 7 | 0 | 5 | 5 | 5 | 0 | 13 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 2 | 3 | 9 | 3 | 0 | 3 | 7 | 9 | 1 | 2 | 4 | 6 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 9 | 1 | 3 | 4 | 8 | 0 | 2 | 3 | 5 | 6 | 1 | 0 | 2 | 5 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 8 | 0 | 0 | 3 | 1 | 1 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
61 | 64 | 63 | 73 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 65 | 55 | 97 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 89 | 99 | 65 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
19 | 23 | 13 | 5 | 12 | 26 | 4 | 8 | 6 | 0 | 2 | 8 | 8 | 0 | 11 | 19 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 3 | 2 | 3 | 18 | 0 | 1 | 6 | 15 | 2 | 3 | 6 | 12 | 2 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 15 | 1 | 4 | 5 | 9 | 1 | 0 | 3 | 6 | 9 | 0 | 1 | 7 | 11 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 4 | 2 | 3 | 8 | 9 | 0 | 0 | 1 | 7 | 0 | 1 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 95 | 114 | 89 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 90 | 76 | 162 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 132 | 163 | 69 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 15 | 17 | 4 | 7 | 33 | 2 | 8 | 7 | 0 | 3 | 2 | 8 | 1 | 15 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 1 | 11 | 16 | 0 | 2 | 4 | 2 | 4 | 4 | 9 | 8 | 1 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 15 | 0 | 4 | 7 | 8 | 1 | 0 | 3 | 6 | 5 | 0 | 0 | 5 | 8 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 10 | 1 | 1 | 2 | 6 | 1 | 1 | 0 | 5 | 2 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
68 | 86 | 93 | 71 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 89 | 55 | 141 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 87 | 152 | 64 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 20 | 37 | 4 | 9 | 27 | 1 | 11 | 10 | 0 | 6 | 3 | 4 | 0 | 8 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 0 | 2 | 6 | 8 | 1 | 0 | 6 | 6 | 2 | 1 | 8 | 11 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 19 | 0 | 4 | 6 | 15 | 0 | 0 | 2 | 4 | 4 | 0 | 0 | 9 | 7 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 4 | 1 | 1 | 0 | 13 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
50 | 79 | 149 | 69 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 101 | 58 | 159 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 92 | 178 | 66 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 20 | 37 | 4 | 9 | 27 | 1 | 11 | 10 | 0 | 6 | 3 | 4 | 0 | 8 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 0 | 2 | 6 | 8 | 1 | 0 | 6 | 6 | 2 | 1 | 8 | 11 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 19 | 0 | 4 | 6 | 15 | 0 | 0 | 2 | 4 | 4 | 0 | 0 | 9 | 7 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 4 | 1 | 1 | 0 | 13 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
50 | 79 | 149 | 69 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 101 | 58 | 159 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 92 | 178 | 66 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
29 | 10 | 28 | 14 | 17 | 34 | 3 | 23 | 8 | 3 | 3 | 4 | 10 | 0 | 14 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 0 | 3 | 7 | 9 | 10 | 0 | 2 | 8 | 6 | 2 | 6 | 5 | 9 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 19 | 0 | 6 | 11 | 12 | 1 | 4 | 7 | 8 | 9 | 2 | 2 | 7 | 16 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 9 | 0 | 0 | 3 | 10 | 1 | 0 | 2 | 6 | 2 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
73 | 120 | 155 | 111 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 112 | 85 | 207 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
23 | 132 | 195 | 109 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 0 | 8 | 4 | 1 | 10 | 1 | 6 | 2 | 0 | 2 | 1 | 4 | 1 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 3 | 1 | 2 | 5 | 1 | 0 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 3 | 0 | 2 | 4 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 4 | 1 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
24 | 22 | 26 | 27 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 24 | 18 | 48 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 20 | 48 | 25 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 35 | 38 | 10 | 14 | 37 | 5 | 18 | 16 | 3 | 4 | 3 | 8 | 0 | 21 | 28 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 3 | 6 | 15 | 20 | 1 | 4 | 11 | 11 | 2 | 7 | 10 | 8 | 0 | 15 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 31 | 1 | 6 | 15 | 12 | 2 | 4 | 8 | 11 | 7 | 0 | 0 | 15 | 22 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 10 | 1 | 3 | 8 | 22 | 0 | 3 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
107 | 130 | 233 | 137 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
64 | 160 | 131 | 252 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
18 | 200 | 247 | 142 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 0 | 3 | 1 | 1 | 0 | 2 | 11 | 1 | 1 | 8 | 0 | 5 | 10 | 12 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 1 | 0 | 2 | 1 | 1 | 2 | 9 | 1 | 8 | 8 | 3 | 0 | 0 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 3 | 2 | 4 | 1 | 0 | 2 | 4 | 0 | 5 | 5 | 3 | 3 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 7 | 4 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
68 | 10 | 48 | 50 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 26 | 33 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
50 | 10 | 37 | 79 |
Total protein-coding genes (size: 11404 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
195 | 139 | 216 | 78 | 80 | 246 | 30 | 136 | 86 | 7 | 50 | 40 | 84 | 14 | 140 | 115 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
45 | 4 | 18 | 49 | 82 | 107 | 6 | 34 | 60 | 94 | 29 | 44 | 56 | 84 | 6 | 63 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
69 | 169 | 9 | 49 | 66 | 97 | 9 | 18 | 37 | 72 | 58 | 10 | 15 | 80 | 88 | 35 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
58 | 80 | 17 | 23 | 43 | 89 | 6 | 8 | 13 | 37 | 5 | 1 | 0 | 7 | 0 | 94 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
812 | 873 | 1224 | 890 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
462 | 965 | 749 | 1623 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
208 | 1022 | 1627 | 942 |
Failed to understand id: ?term=("Cervus nippon"[Organism]) AND (refseq[filter] AND mitochondrion[filter])